MD-jeep is a software tool for solving distance geometry problems. It is able to solve a subclass of instances of the problem for which a discrete reformulation can be supplied. We refer to this subclass of instances as the Discretizable Molecular Distance Geometry Problem (DMDGP). We employ a Branch & Prune (BP) algorithm for the solution of DMDGPs.
MD-jeep is the result of a strong collaboration among Antonio Mucherino, Leo Liberti, Carlile Lavor and Nelson Maculan. Many details regarding the discretization of the problem and the BP algorithm can be found in our publications (the list of the most recent papers can be found here).
MD-jeep is distributed under the GNU General Public Licence (v.2). If you experience problems when using our software, please let us know!