
Conferences and Workshops

Federated Conference on Computer Science and Information Systems (FedCSIS19).
Leipzig, Germany, September 14, 2019.
Web site.
A. Mucherino, JH. Lin,
An Efficient Exhaustive Search for the Discretizable Distance Geometry Problem with Interval Data.

XVI international conference on Algebra, Number Theory, and Discrete Geometry: Modern Problems,
Applications, and Problems of History
Tula, Russia, May 1318, 2019.
Web site.
A. Mucherino,
On the Manipulation of Simple Animations by dynamical Distance Geometry.

7th International WorkConference on Bioinformatics and Biomedical Engineering (IWBBIO19).
Granada, Spain, May 810, 2019.
Web site.
A. Mucherino, JH. Lin, D.S. Gonçalves,
A CoarseGrained Representation for Discretizable Distance Geometry with Interval Data.

Motion, Interaction and Games (MIG18).
Cyprus, Greece, November 810, 2018.
Web site.
Z. Liu, A. Mucherino, L. Hoyet, F. Multon,
Surface based Motion Retargeting by Preserving Spatial Relationship.

Federated Conference on Computer Science and Information Systems (FedCSIS18).
Poznan, Poland, September 912, 2018.
Web site.
F. Elain, A. Mucherino, L. Hoyet, R. Kulpa,
Feature Selection in TimeSeries Motion Databases.

NMR Protein Determination: Theory and Methods.
Campinas, São Paulo. May 2122, 2018.
A. Mucherino,
10 Years of Research on Discretizable Distance Geometry with Applications in Structural Biology: some Historical Facts and New Challenges.
Invited Speaker.

GOR Distance Geometry 2017 (GORDG17).
Bad Honnef, Germany. November 2324, 2017.
Web site.
A. Mucherino,
Distance Geometry, Dimensionality Reduction and Motion Adaptation.
Invited Speaker.

Motion in Games (MIG17).
Barcelona, Spain. November 810, 2017.
Web site.
A. Bernardin, L. Hoyet, A. Mucherino, D.S. Gonçalves, F. Multon,
Normalized Euclidean Distance Matrices for Human Motion Retargeting.

Geometric Science of Information (GSI17).
Paris, France. November 79, 2017.
Web site.
A. Mucherino, D.S. Gonçalves,
An Approach to Dynamical Distance Geometry.

Semaine de l'Information Graphique et de la Réalité Virtuelle (IGRV17).
Rennes, France. October 2327, 2017.
Web site.
A. Bernardin, L. Hoyet, A. Mucherino, D.S. Gonçalves, F. Multon,
Normalized Euclidean Distance Matrices for Human Motion Retargeting.

Federated Conference on Computer Science and Information Systems (FedCSIS17).
Prague, Czech Republic, September 36, 2017.
Web site.
A. Mucherino, D.S. Gonçalves, A. Bernardin, L. Hoyet, F. Multon,
A DistanceBased Approach for Human Posture Simulations.

ROADEF17.
Metz, France. February 2224, 2017.
Web site.
J. Omer, A. Mucherino,
Integer Programming for the Search of a Discretization Order in Distance Geometry Problems.

Federated Conference on Computer Science and Information Systems (FedCSIS16).
Gdansk, Poland, September 1114, 2016.
Web site.
W. Gramacho, A. Mucherino, JH. Lin, C. Lavor,
A New Approach to the Discretization of Multidimensional Scaling.

17th International Conference on Artificial Intelligence: Methodology, Systems, Applications
(AIMSA16).
Varna, Bulgaria. September 79, 2015.
Web site.
S. Fidanova, O. Roeva, A. Mucherino, K. Kapanova,
InterCriteria Analysis of Ant Algorithm with Environment Change for GPS Surveying Problem.

Federated Conference on Computer Science and Information Systems (FedCSIS15).
Lodz, Poland, September 1316, 2015.
Web site.
A. Mucherino, S. Fidanova, M. Ganzha,
Ant Colony Optimization with Environment Changes: an Application to GPS Surveying.

10th International Conference on LargeScale Scientific Computations (LSSC15).
Sozopol, Bulgaria. June 812, 2015.
Web site.
A. Mucherino,
Optimal Discretization Orders for Distance Geometry: a Theoretical Standpoint.

3rd International WorkConference on Bioinformatics and Biomedical Engineering (IWBBIO15).
Granada, Spain. April 1517, 2015.
Web site.
A. Mucherino,
A Pseudo de Bruijn Graph Representation for Discretization Orders for Distance Geometry.

ROADEF15.
Marseille, France. February 2527, 2015.
Web site.
A. Mucherino,
Discretization Orders and Distance Geometry.

Many Faces of Distances (MFD14).
Campinas, São Paulo, Brazil. October 2224, 2014.
Web site.
D. Gonçalves, J. Nicolas, A. Mucherino,
Searching for Optimal Orders for Discretized Distance Geometry.

Federated Conference on Computer Science and Information Systems (FedCSIS14).
Warsaw, Poland, September 710, 2014.
Web site.
D. Gonçalves, A. Mucherino, C. Lavor,
An Adaptive Branching Scheme for the Branch & Prune Algorithm applied to Distance Geometry.

20th Conference of the International Federation of Operational Research Societies (IFORS14).
Barcelona, Spain, July 1318, 2014.
Web site.
A. Mucherino,
Molecular Distance Geometry and Atomic Orders.

2nd International Symposium on
Uncertainty Quantification and Stochastic Modeling (Uncertainties14).
Rouen, France, June 2327, 2014.
Web site.
D. Gonçalves, C. Lavor, A. Mucherino,
Uncertainty in the Determination of Protein Conformations from NMR data.

INFORMS Annual Meeting (INFORMS13).
Minneapolis, USA, October 69, 2013.
Web site.
Two contributions:

C. Lavor. L. Liberti, N. Maculan, A. Mucherino,
Molecular Structure Determination by a Discrete Geometric Approach.

A. Cassioli, C. Lavor, L. Liberti, A. Mucherino,
Recent Advances on the Solution of the DMDGP.

Federated Conference on Computer Science and Information Systems (FedCSIS13).
Krakov, Poland, September 811, 2013.
Web site.
D. Gonçalves, A. Mucherino, C. Lavor,
Energybased Pruning Devices for the BP Algorithm for Distance Geometry.

Geometric Science of Information (GSI13).
Paris, France. August 2830, 2013.
Web site.
A. Mucherino,
On the Identification of Discretization Orders for Distance Geometry with Intervals.
The video of the presentation is available on
YouTube:
part1,
part2,
part3.

International Conference on Continuous Optimization (ICCOPT13).
Lisbon, Portugal. July 27  August 1, 2013.
Web site.
A. Mucherino,
Discretizing Vertex Orders for Distance Geometry.

Workshop on Distance Geometry and Applications (DGA13).
Manaus, Amazonas, Brazil. June 2427, 2013.
Web site.
A. Mucherino,
Discretization Orders for Distance Geometry,
Invited Speaker.
My slides.

International WorkConference on Bioinformatics and Biomedical Engineering (IWBBIO13).
Granada, Spain. March 1820, 2013.
Web site.
R. Alves, A. Cassioli, A. Mucherino, C. Lavor, L. Liberti,
The Integration of Clifford Algebra in the iBP Algorithm for the DMDGP.

2nd International Conference on Computational Biomedicine.
Gainesville, Florida, USA. January 2426, 2013.
Web site.
J. Seo, DS. Kim, A. Mucherino, JK. Kim, C. Lavor,
BetaNMR: a BetaComplex Approach to Molecular Distance Geometry Problem.
The abstract.

Ottawa Symposium on Biochemistry & Biophysics.
Ottawa, USA. October 2425, 2012.
Web site.
C. Lavor, A. Mucherino, L. Liberti,
A Geometric Approach for Solving Protein Structure by NMR.

INFORMS Annual Meeting 2012 (INFORMS12).
Phoenix, USA. October 1417, 2012.
Web site.
A. Cassioli, A. Mucherino, C. Lavor, L. Liberti,
On the Solution of DMDGPs with NMR data.

Congreso LatinoIberoamericano de Investigación Operativa (CLAIO12).
Rio de Janeiro, Brazil, September 2428, 2012.
Web site.
V. Costa, A. Mucherino, C. Lavor, L.M. Carvalho, N. Maculan,
A Discrete Approach for the Determination of Protein Structures using NMR Data.

Federated Conference on Computer Science and Information Systems (FedCSIS12).
Wroclaw, Poland, September 912, 2012.
Web site.
V. Costa, A. Mucherino, C. Lavor, L.M. Carvalho, N. Maculan,
On Suitable Orders for Discretizing Molecular Distance Geometry Problems related to Protein Side Chains.

21st International Symposium on Mathematical Programming (ISMP12).
Berlin, Germany, August 19–24, 2012.
Web site.
Two contributions:

C. Lavor, A. Mucherino, L. Liberti, N. Maculan,
A Discrete Approach for Solving Distance Geometry Problems related to Protein Structure.

V. Costa, A. Mucherino, C. Lavor, L.M. Carvalho, N. Maculan,
ReOrdering Protein Side Chains for the Discretization of MDGPs.

International Conference on Magnetic Resonance in Biological Systems (ICMRBS12).
Lyon, France, August 1924, 2012.
Web site.
A. Mucherino, C. Lavor, L. Liberti, N. Maculan, M. Nilges, T. Malliavin,
How a Combinatorial Reformulation of the Molecular Distance Geometry Problem Could Provide New
Perspectives for NMR Structure Determination.

2012 SIAM Annual Meeting (SIAM12).
Minneapolis, Minnesota, USA, July 9–13, 2012.
Web site.
C. Lavor, L. Liberti, N. Maculan, A. Mucherino,
Advances on the Discretizable Distance Geometry Problem.

Mathematics of Distances and Applications 2012 (MDA12).
Varna, Bulgaria, July 2–5, 2012.
Web site.
A. Mucherino, C. Lavor, L. Liberti, N. Maculan,
On the Discretization of Distance Geometry Problems.

Global Optimization Workshop 2012 (GOW12).
Natal, Brazil, June 26–29, 2012.
Web site.
C. Lavor, A. Mucherino, L. Liberti, N. Maculan,
Finding LowEnergy Homopolymer Conformations by a Discrete Approach.

Workshop on Parallel Computing and Optimization (PCO12).
Shanghai, China, May 21–25, 2012.
Web site.
W. Gramacho, A. Mucherino, C. Lavor, N. Maculan,
A Parallel BP Algorithm for the Discretizable Distance Geometry Problem.

ROADEF 2012.
Angers, France, April 1113, 2012.
Web site.
M. Le BoudicJamin, A. Mucherino, R. Andonov,
Modeling Protein Flexibility by Distance Geometry.

1st FrenchBrazilian Symposium on Biosciences (br.BIO.fr).
Paris, France, March 21, 2012.
Web site.
C. Lavor, L. Liberti, A. Mucherino, N. Maculan,
Discrete Approaches for Solving Molecular Distance Geometry Problems.

Computational Structural Bioinformatics Workshop (CSBW11).
Atlanta, GA, USA, November 12–15, 2011.
Web site.
A. Mucherino, C. Lavor, L. Liberti,
A SymmetryDriven BP Algorithm for the Discretizable Molecular Distance Geometry Problem.

Federated Conference on Computer Science and Information Systems (FedCSIS11).
Szczecin, Poland, September 1821, 2011.
Web site.
A. Mucherino,
Extending the Definition of βConsistent Biclustering for Feature Selection.

10th International Conference on Modeling and Applied Simulation (MAS11).
Rome, Italy, September 1214, 2011.
Web site.
A. Mucherino, A. Urtubia,
Feature Selection for Datasets of Wine Fermentations.

Workshop "Data Mining in Agriculture" (DMA11).
New York City, USA, September 2, 2011.
Web site.
A. Mucherino, G. Ruß,
Recent Developments in Data Mining and Agriculture.

5th Annual International Conference on Combinatorial Optimization and Applications (COCOA11).
Zhangjiajie, China, August 46, 2011.
Web site.
L. Liberti, B. Masson, J. Lee, C. Lavor, A. Mucherino,
On the Number of Solutions of the Discretizable Molecular Distance Geometry Problem.

Conference for the International Federation of Operational Research Societies 2011 (IFORS11).
Melbourne, Australia, July 1015, 2011.
Web site.
L. Liberti, C. Lavor, A. Mucherino,
The Mathematics of Discrete Distance Geometry.

The Second World Congress on Global Optimization in Engineering & Science (WCGO11).
Crete, Greece, July 37, 2011.
Web site.
Two contributions:

L. Liberti, C. Lavor, N. Maculan, A. Mucherino,
The Discrete Side of Distance Geometry.

A. Mucherino, C. Lavor, L. Liberti, N. Maculan,
Exploiting NMR Information for Solving Distance Geometry Problems.

10th CologneTwente Workshop on Graphs and Combinatorial Optimization (CTW11).
Frascati, Rome, Italy, June 1416, 2011.
Web site.
Two contributions:

A. Mucherino, I. Wohlers, G.W. Klau, R. Andonov,
Sparsifying Distance Matrices for ProteinProtein Structure Alignments.

L. Liberti, B. Masson, C. Lavor, A. Mucherino,
BranchandPrune Trees with Bounded Width.

8th International Conference on LargeScale Scientific Computations (LSSC11).
Sozopol, Bulgaria, June 610, 2011.
Web site.
A. Mucherino, M. Fuchs, X. Vasseur, S. Gratton,
Variable Neighborhood Search for Robust Optimization and Applications to Aerodynamics.

7th International Symposium on Bioinformatics Research and Applications (ISBRA11).
Changsha, China, May 27–29, 2011.
Web site.
L. Liberti, C. Lavor, A. Mucherino,
An Exponential Algorithm for the Discretizable Molecular Distance Geometry Problem is Polynomial on Proteins.

International Symposium on Experimental Algorithms (SEA11).
Crete, Greece, May 57, 2011.
Web site.
Download slides.
A. Mucherino, C. Lavor, T. Malliavin, L. Liberti, M. Nilges, N. Maculan,
Influence of Pruning Devices on the Solution of Molecular Distance Geometry Problems.

ROADEF 2011.
Saint Etienne, France, March 24, 2011.
Web site.
A. Mucherino, C. Lavor, L. Liberti,
The Discretizable Molecular Distance Geometry Problem: from Ideal to Real Instances.

International Workshop on Computational Proteomics, International Conference on Bioinformatics & Biomedicine (BIBM10).
Hong Kong, December 1821, 2010.
Web site.
C. Lavor, L. Liberti, A. Mucherino,
On the Solution of Molecular Distance Geometry Problems with Interval Data.

International Conference on Metaheuristics and Nature Inspired Computing (META10).
Djerba, Tunisia, October 2731, 2010.
Web site.
A. Mucherino, L. Jourdan, EG. Talbi,
A Heuristic for Biclustering based on a Bilevel Reformulation.

Third International Congress on Mathematical Software (ICMS10).
Kobe, Japan, September 1317, 2010.
Web site.
Download slides.
See video of the presentation.
A. Mucherino, L. Liberti, C. Lavor,
MDjeep: an Implementation of a Branch & Prune Algorithm for Distance Geometry Problems.

Toulouse Global Optimization 2010 (TOGO10).
Toulouse, France, August 31 / September 3, 2010.
Web site.
A. Mucherino, C. Lavor, L. Liberti, N. Maculan,
Strategies for Solving Distance Geometry Problems with Inexact Distances by Discrete Approaches.

Workshop "Data Mining in Agriculture" (DMA10).
Berlin, Germany, July 14, 2010.
Web site.
A. Mucherino, A. Urtubia,
Consistent Biclustering and Applications to Agriculture.

24th European Conference on Operational Research (EURO10).
Lisbon, Portugal, July 1114, 2010.
Web site.
A. Mucherino, C. Lavor, L. Liberti, N. Maculan, T. Bonnates, G. Paillard,
Discretization of Molecular Distance Geometry Problems by Defining Artificial Orderings on the Molecule.

International Conference on Biomedical Data & Knowledge Mining: Towards Biomarker Discovery.
Crete, Greece, July 79, 2010.
Web site.
A. Mucherino, A. Urtubia, L. Liberti,
Analysing Wine Fermentations by Consistent Biclustering.

EU/MEeting 2010 (10th Anniversary of the Metaheuristics Community).
Lorient, France, June 2–4, 2010.
Web site.
A. Mucherino, S. Cafieri,
A New Heuristic Algorithm for Consistent Biclustering.

ACS/IEEE International Conference on Computer Systems and Applications (AICCSA10).
Hammamet, Tunisia, May 1619, 2010.
Web site.
A. Mucherino, C. Lavor, L. Liberti, EG. Talbi,
A Parallel Version of the Branch & Prune Algorithm for the Molecular Distance Geometry Problem.

Grid5000 Spring School.
Lille, France, April 69, 2010.
Web site.
A. Mucherino, C. Lavor, L. Liberti, EG. Talbi,
On Suitable Parallel Implementations of the Branch & Prune Algorithm for Distance Geometry.

ROADEF 2010.
Toulouse, France, February 2426, 2010.
Web site.
A. Mucherino, C. Lavor, L. Liberti, N. Maculan,
A Discrete Approach for Finding the Conformation of Molecules from NMR Data.

Computational Structural Bioinformatics Workshop (CSBW09).
Washington D.C., USA, November 14, 2009.
Web site.
C. Lavor, A. Mucherino, L. Liberti, N. Maculan,
An Artificial Backbone of Hydrogens for Finding the Conformation of Protein Molecules.

International Conference on Bioinformatics and Biomedicine (ICBB09).
Venice, Italy, October 2830, 2009.
Web site.
A. Mucherino, C. Lavor,
The Branch and Prune Algorithm for the Molecular Distance Geometry Problem with Inexact Distances.

International Multiconference on Computer Science and Information Technology (IMCSIT09).
Mragowo, Poland, October 1214, 2009.
Web site.
C. Lavor, A. Mucherino, L. Liberti, N. Maculan,
Computing Artificial Backbones of Hydrogen Atoms in order to Discover Protein Backbones.

24th IFIP TC7 Conference on System Modelling and Optimization (IFIP09).
Buenos Aires, Argentina, July 2731, 2009.
Web site.
C. Lavor, A. Mucherino, L. Liberti, N. Maculan,
The Discretizable Molecular Distance Geometry Problem for Instances Containing Experimental Errors.

Genetic and Evolutionary Computation Conference (GECCO09).
Montréal, Canada, July 8–12, 2009.
Web site.
A. Mucherino, L. Liberti, C. Lavor, N. Maculan,
Comparisons between an Exact and a MetaHeuristic Algorithm for the Molecular Distance Geometry Problem.

2nd International Symposium on Engineering Systems.
MIT, Cambridge, Massachusetts, USA, June 1517, 2009.
Web site.
F. Marinelli, O. de Weck, D. Krob, L. Liberti, A. Mucherino,
A General Framework for Combined Module and Scalebased Product Platform Design.
Download the slides.

8th CologneTwente Workshop on Graphs and Combinatorial Optimization (CTW09).
Paris, France, June 2–5, 2009.
Web site.
A. Mucherino, C. Lavor, N. Maculan,
The Molecular Distance Geometry Problem Applied to Protein Conformations.

Florida Annual Meeting and Exposition 2009 (FAME09).
Orlando, Florida, USA, May 1417, 2009.
Web site.
A. Masello, A. Mucherino, G. Christou,
Bond Valence Sum (BVS) in FE and MN Complexes: Parameters and Formula Optimization.

24th Annual ACM Symposium on Applied Computing (SAC09).
Honolulu, Hawaii, USA, March 812, 2009.
Web site.
C. Lavor, L. Liberti, A. Mucherino, N. Maculan,
On a Discretizable Subclass of Instances of the Molecular Distance Geometry Problem.

ROADEF 2009.
Nancy, France, Febraury 1012, 2009.
Web site.
C. Lavor, L. Liberti, A. Mucherino, N. Maculan,
Recent Results on the Discretizable Molecular Distance Geometry Problem.

Bioinformatics and Computational Biology in the Campania Region (BBCC08).
Avellino, Italy, December 12, 2008.
Web site.
A. Mucherino,
A Novel Approach for the Molecular Distance Geometry Problem.

Workshop "Journée Optimeo".
Université ParisSud XI, Orsay, France, November 21, 2008.
Web site.
A. Mucherino,
Combinatorial Optimization for the Molecular Distance Geometry Problem.

Workshop on Automatic Reformulation Search (ARS).
École Polytechnique, Palaiseau, France, October 31, 2008.
Web site.
A. Mucherino,
The Discretizable Distance Geometry Problem.

8th International Conference on Cooperative Control and Optimization (CCO08).
Gainesville, Florida, USA, January 30 / February 1, 2008.
Web site.
A. Kammerdiner, A. Mucherino, P.M. Pardalos,
Application of Monkey Search Metaheuristic to Solving MAP Instances.

Workshop on Protein Folding.
Minneapolis, Minnesota, USA, January 1418, 2008.
Web site.
A. Mucherino,
Simulating Protein Conformations by a Geometric Model.

Data Mining, System Analysis and Optimization in Biomedicine (Biomedicine07).
Gainesville, Florida, USA, March 2830, 2007.
Web site.
A. Mucherino, O. Seref, P.M. Pardalos,
A Novel MetaHeuristic: Monkey Search and Applications on a Geometric Model for Protein Folding.

Bioinformatics and Computational Biology in the Campania Region (BBCC06).
Avellino, Italy, December 18, 2006.
Web site.
A. Mucherino,
An AbInitio Geometric Method for Protein Fold Simulations.

Systems Analysis, Data Mining and Optimization in Biomedicine (Biomedicine05).
Gainesville, Florida, USA, Febraury 24, 2005.
Web site.
A. Mucherino, M. D'Apuzzo, D. di Serafino, S. Costantini, A. Facchiano, G. Colonna,
Analysing Protein Structural Datasets to get Information on Protein Shapes.

Computational Management Science (CMS).
Neuchatel, Switzerland, April 25, 2004.
Web site.
G. Ceci, A. Mucherino, M. D'Apuzzo, D. di Serafino, S. Costantini, A. Facchiano, G. Colonna,
A Geometrical Approach for Protein Secondary Structure Simulations: Computational Issues.

Unravelling Nature's Networks: from Microarray and Proteomic Analysis to Systems Biology.
Sheffield, England, July 2122 2003.
Web site.
G. Ceci, A. Mucherino, M. D'Apuzzo, D. di Serafino, S. Costantini, A. Facchiano, G. Colonna,
Computational Issues of a Topological Approach to Protein Folding.
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