Publications


Books

  1. A. Mucherino, P. Papajorgji, P.M. Pardalos, Data Mining in Agriculture, Springer, 2009. View a detailed description. Buy it!

  2. S. Cafieri, A. Mucherino, G. Nannicini, F. Tarissan, L. Liberti (Eds.), Proceedings of the 8th Cologne-Twente Workshop on Graphs and Combinatorial Optimization, CTW 2009, Paris, France, June 2-4 2009. View table of contents. Download the book of proceedings.

International journals

  1. C. Lavor, A. Mucherino, L. Liberti, N. Maculan, Discrete Approaches for Solving Molecular Distance Geometry Problems using NMR Data, to appear in International Journal of Computational Biosciences, 2010. Show abstract.

  2. L. Liberti, C. Lavor, A. Mucherino, N. Maculan, Molecular Distance Geometry Methods: from Continuous to Discrete, to appear in International Transactions in Operational Research, 2010. Currently available on Optimization Online. Show abstract.

  3. A. Mucherino, A. Masello, Statistical Analysis on the Globular Shape of Protein Conformations, JP Journal of Biostatistics 4 (1), 1-12, 2010. Download paper. Show abstract.

  4. A. Mucherino, P.J. Papajorgji, P.M. Pardalos, A Survey of Data Mining Techniques Applied to Agriculture, Operational Research: An International Journal 9 (2), 121–140, 2009. Download paper. Show abstract.

  5. A. Mucherino, S. Costantini, D. di Serafino, M. D'Apuzzo, A. Facchiano and G. Colonna, Towards a Computational Description of the Structure of all-alpha Proteins as Emergent Behaviour of a Complex System, Computational Biology and Chemistry 32 (4), 233-239, 2008. Download paper. Show abstract.

  6. S. Cafieri, M. D'Apuzzo, M. Marino, A. Mucherino, G. Toraldo, Interior Point Solver for Large-Scale Quadratic Programming Problems with Bound Constraints, Journal of Optimization Theory and Applications 129 (1), 55-75, 2006. Download paper. Show abstract.

National journals

  1. A. Mucherino, C. Lavor, L. Liberti, N. Maculan, On the Definition of Artificial Backbones for the Discretizable Molecular Distance Geometry Problem, Mathematica Balkanica 23 (3-4), 289–302, 2009. Download paper. Show abstract.

Conference papers (referred)

  1. A. Mucherino, C. Lavor, L. Liberti, and E.-G. Talbi, A Parallel Version of the Branch & Prune Algorithm for the Molecular Distance Geometry Problem, IEEE Conference Proceedings, ACS/IEEE International Conference on Computer Systems and Applications (AICCSA10), Hammamet, Tunisia, May 2010. Download paper. Show abstract.

  2. C. Lavor, A. Mucherino, L. Liberti, and N. Maculan, An Artificial Backbone of Hydrogens for Finding the Conformation of Protein Molecules, IEEE Conference Proceedings, Computational Structural BioinformaticsWorkshop (CSBW09), Washington D.C., USA, 152-155, 2009. Download paper. Show abstract.

  3. A. Mucherino, C. Lavor, The Branch and Prune Algorithm for the Molecular Distance Geometry Problem with Inexact Distances, Proceedings of World Academy of Science, Engineering and Technology 58, International Conference on Bioinformatics and Biomedicine (ICBB09), Venice, Italy, 349-353, 2009. Download paper. Show abstract.

  4. C. Lavor, A. Mucherino, L. Liberti, and N. Maculan, Computing Artificial Backbones of Hydrogen Atoms in order to Discover Protein Backbones, IEEE Conference Proceedings, International Multiconference on Computer Science and Information Technology (IMCSIT09), Workshop on Computational Optimization (WCO09), Mragowo, Poland, 751-756, 2009. Download paper. Show abstract.

  5. A. Mucherino, L. Liberti, C. Lavor, and N. Maculan, Comparisons between an Exact and a Meta-Heuristic Algorithm for the Molecular Distance Geometry Problem, ACM Conference Proceedings, Genetic and Evolutionary Computation Conference (GECCO09), Montréal, Canada, 333-340, 2009. Download paper. Show abstract.

  6. F. Marinelli, O. de Weck, D. Krob, L. Liberti, A. Mucherino, A General Framework for Combined Module- and Scale-based Product Platform Design, 2-nd International Symposium on Engineering Systems Proceedings, MIT, Cambridge, Massachusetts, June 2009. Download paper. Show abstract.

  7. A.R. Kammerdiner, A. Mucherino, and P.M. Pardalos, Application of Monkey Search Meta-Heuristic to Solving Instances of the Multidimensional Assignment Problem, Proceedings of the 8th International Conference on Optimization and Cooperative Control Strategies (CCO08), Gainesville, Florida, Jan/Feb 2008, M.J. Hirsch, C. Commander, P.M. Pardalos, R. Murphey (Eds.), Lecture Notes in Control and Information Sciences 381, 385–397, 2009. Download paper. Show abstract.

  8. C. Lavor, L. Liberti, A. Mucherino, and N. Maculan, On a Discretizable Subclass of Instances of the Molecular Distance Geometry Problem, ACM Conference Proceedings, 24th Annual ACM Symposium on Applied Computing, Hawaii, USA, 804-805, 2009. Download paper. Show abstract.

  9. A. Mucherino and O. Seref, Monkey Search: A Novel Meta-Heuristic Search for Global Optimization, Proceedings of the Conference “Data Mining, System Analysis and Optimization in Biomedicine”, Gainesville, Florida, March 2007, O. Seref, O.E. Kundakcioglu, P.M. Pardalos (Eds.), AIP Conference Proceedings 953, 162–173, 2007. Download paper. Show abstract.

Extended abstracts (referred)

  1. A. Mucherino, C. Lavor, L. Liberti, and N. Maculan, A Discrete Approach for Finding the Conformation of Molecules from NMR Data, Proceedings of the conference ROADEF 2010, Toulouse, France, February 2010. Download extended abstract.

  2. A. Mucherino, C. Lavor and N. Maculan, The Molecular Distance Geometry Problem Applied to Protein Conformations, Proceedings of the 8th Cologne-Twente Workshop on Graphs and Combinatorial Optimization (CTW09), S. Cafieri, A. Mucherino, G. Nannicini, F. Tarissan, L. Liberti (Eds.), 337-240, Paris, France, 2009. Download extended abstract.

  3. C. Lavor, L. Liberti, A. Mucherino, and N. Maculan, Recent Results on the Discretizable Molecular Distance Geometry Problem, Proceedings of the conference ROADEF 2009, Nancy, France, 283-284, 2009. Download extended abstract.

Book chapters (referred)

  1. A. Mucherino and O. Seref, Modeling and Solving Real Life Global Optimization Problems with Meta-Heuristic Methods, In: "Advances in Modeling Agricultural Systems", Springer Optimization and Its Applications Series, P.J. Papajorgji, P.M. Pardalos (Eds.), 403–420, 2008. Download paper. Show abstract.

  2. G. Ceci, A. Mucherino, M. D’Apuzzo, D. di Serafino, S. Costantini, A. Facchiano, G. Colonna, Computational Methods for Protein Fold Prediction: an Ab-Initio Topological Approach, In: "Data Mining in Biomedicine", Springer Optimization and Its Applications Series 7, P.M. Pardalos, V. Boginski and A. Vazacopoulos (Eds.), 391–429, 2007. Download paper. Show abstract.

Other

  1. A. Mucherino et al., A New Heuristic for Feature Selection by Consistent Biclustering, working paper.

  2. A. Mucherino, O. Seref, P.M. Pardalos, Simulating Protein Conformations through Global Optimization, arXiv:0811.3094v1. Show abstract.

Theses

  1. A. Mucherino, Geometric Aspects in the Simulation of Protein Folding Processes (in Italian), PhD Thesis, Second University of Naples. December 18 2005.

  2. A. Mucherino, Quadratic Optimization: Algorithms and Software for Dense Problems (in Italian), Master Thesis, Second University of Naples. October 30 2001.


Back to Home