Antonio Mucherino's Publications


For my publication list sorted by number of citations, please visit my Google Scholar citations page.

Books
  1. A. Mucherino, P. Papajorgji, P.M. Pardalos, Data Mining in Agriculture, 274 pages, Springer, 2009. Detailed description. Available for purchase on Springer.com or Amazon.com

  2. A. Mucherino, C. Lavor, L. Liberti, N. Maculan (Eds.), Distance Geometry: Theory, Methods and Applications, 410 pages, Springer, 2013. See list of contributions. Available for purchase on Springer.com or Amazon.com


Special issues
  1. A. Mucherino, R. de Freitas, C. Lavor, Distance Geometry and Applications, special issue of Discrete Applied Mathematics 197, 1-144, 2015. See list of contributions.


Books of conference proceedings
  1. A. Andrioni, R. de Freitas, C. Lavor, L. Liberti, N. Maculan, A. Mucherino (Eds.), Proceedings of Distance Geometry and Applications, DGA13, Manaus, Amazonas, Brazil, June 24-27, 2013. Download the book of proceedings.

  2. S. Cafieri, A. Mucherino, G. Nannicini, F. Tarissan, L. Liberti (Eds.), Proceedings of the 8th Cologne-Twente Workshop on Graphs and Combinatorial Optimization, CTW09, Paris, France, June 2-4, 2009. See table of contents. Download the book of proceedings.


International journals
  1. D.S. Gonçalves, A. Mucherino, C. Lavor, L. Liberti, Recent Advances on the Interval Distance Geometry Problem, to appear in Journal of Global Optimization, 2017.

  2. S.J.L. Billinge, Ph.M. Duxbury, D.S. Gonçalves, C. Lavor, A. Mucherino, Assigned and Unassigned Distance Geometry: Applications to Biological Molecules and Nanostructures, Quarterly Journal of Operations Research 14(4), 337-376, 2016. Show abstract. Download paper.

  3. D.S. Gonçalves, A. Mucherino, Optimal Partial Discretization Orders for Discretizable Distance Geometry, International Transactions in Operational Research 23(5), 947-967, 2016 Show abstract. Download paper.

  4. A. Cassioli, B. Bardiaux, G. Bouvier, A. Mucherino, R. Alves, L. Liberti, M. Nilges, C. Lavor, T.E. Malliavin, An Algorithm to Enumerate all Possible Protein Conformations verifying a Set of Distance Restraints, BMC Bioinformatics 16:23, 15 pages, 2015. Show abstract. Download paper.

  5. D.S. Gonçalves, A. Mucherino, Discretization Orders and Efficient Computation of Cartesian Coordinates for Distance Geometry, Optimization Letters 8(7), 2111-2125, 2014. Show abstract. Download paper.

  6. V. Costa, A. Mucherino, C. Lavor, A. Cassioli, L.M. Carvalho, N. Maculan, Discretization Orders for Protein Side Chains, Journal of Global Optimization 60(2), 333-349, 2014. Show abstract. Download paper.

  7. L. Liberti, C. Lavor, N. Maculan, A. Mucherino, Euclidean Distance Geometry and Applications, SIAM Review 56(1), 3-69, 2014. Preliminary version available on arXiv, arXiv:1205.0349v1. Show abstract. Download paper.

  8. L. Liberti, B. Masson, J. Lee, C. Lavor, A. Mucherino, On the Number of Realizations of Certain Henneberg Graphs arising in Protein Conformation, Discrete Applied Mathematics 165, 213-232, 2014. Show abstract. Download paper.

  9. C. Lavor, L. Liberti, A. Mucherino, The interval Branch-and-Prune Algorithm for the Discretizable Molecular Distance Geometry Problem with Inexact Distances, Journal of Global Optimization 56(3), 855-871, 2013. Show abstract. Download paper.

  10. A. Mucherino, C. Lavor, L. Liberti, The Discretizable Distance Geometry Problem, Optimization Letters 6(8), 1671-1686, 2012. Show abstract. Download paper.

  11. A. Mucherino, C. Lavor, L. Liberti, Exploiting Symmetry Properties of the Discretizable Molecular Distance Geometry Problem, Journal of Bioinformatics and Computational Biology 10(3), 1242009(1-15), 2012. Show abstract. Download paper.

  12. C. Lavor, L. Liberti, N. Maculan, A. Mucherino, The Discretizable Molecular Distance Geometry Problem, Computational Optimization and Applications 52, 115-146, 2012. Show abstract. Download paper.

  13. C. Lavor, J. Lee, A. Lee-St.John, L. Liberti, A. Mucherino, M. Sviridenko, Discretization Orders for Distance Geometry Problems, Optimization Letters 6(4), 783-796, 2012. Show abstract. Download paper.

  14. C. Lavor, L. Liberti, N. Maculan, A. Mucherino, Recent Advances on the Discretizable Molecular Distance Geometry Problem, European Journal of Operational Research 219, 698-706, 2012. Show abstract. Download paper.

  15. C. Lavor, A. Mucherino, L. Liberti, N. Maculan, On the Computation of Protein Backbones by using Artificial Backbones of Hydrogens, Journal of Global Optimization 50(2), 329-344, 2011. Show abstract. Download paper.

  16. L. Liberti, C. Lavor, A. Mucherino, N. Maculan, Molecular Distance Geometry Methods: from Continuous to Discrete, International Transactions in Operational Research 18(1), 33-51, 2011. Show abstract. Download paper. ITOR Top Article in 2013.

  17. C. Lavor, A. Mucherino, L. Liberti, N. Maculan, Discrete Approaches for Solving Molecular Distance Geometry Problems using NMR Data, International Journal of Computational Biosciences 1(1), 88-94, 2010. Show abstract. Download paper.

  18. A. Mucherino, A. Masello, Statistical Analysis on the Globular Shape of Protein Conformations, JP Journal of Biostatistics 4(1), 1-12, 2010. Show abstract. Download paper.

  19. A. Mucherino, P.J. Papajorgji, P.M. Pardalos, A Survey of Data Mining Techniques Applied to Agriculture, Operational Research: An International Journal 9(2), 121-140, 2009. Show abstract. Download paper.

  20. A. Mucherino, S. Costantini, D. di Serafino, M. D'Apuzzo, A. Facchiano, G. Colonna, Towards a Computational Description of the Structure of all-alpha Proteins as Emergent Behaviour of a Complex System, Computational Biology and Chemistry 32(4), 233-239, 2008. Show abstract. Download paper.

  21. S. Cafieri, M. D'Apuzzo, M. Marino, A. Mucherino, G. Toraldo, Interior Point Solver for Large-Scale Quadratic Programming Problems with Bound Constraints, Journal of Optimization Theory and Applications 129(1), 55-75, 2006. Show abstract. Download paper.


National journals
  1. A. Mucherino, C. Lavor, L. Liberti, N. Maculan, On the Definition of Artificial Backbones for the Discretizable Molecular Distance Geometry Problem, Mathematica Balkanica 23(3-4), 289-302, 2009. Show abstract. Download paper.


Conference papers (refereed)
  1. W. Gramacho, A. Mucherino, J-H. Lin, C. Lavor, A New Approach to the Discretization of Multidimensional Scaling, IEEE Conference Proceedings, Federated Conference on Computer Science and Information Systems (FedCSIS16), Workshop on Computational Optimization (WCO16), Gdansk, Poland, 601-609, 2016. Show abstract. Download paper.

  2. S. Fidanova, O. Roeva, A. Mucherino, K. Kapanova, InterCriteria Analysis of Ant Algorithm with Environment Change for GPS Surveying Problem, Lecture Notes in Artificial Interlligence 9883, Proceedings of the 17th International Conference on Artificial Intelligence: Methodology, Systems, Applications (AIMSA16), Varna, Bulgaria, 271-278, 2016. Show abstract. Download paper.

  3. A. Mucherino, Optimal Discretization Orders for Distance Geometry: a Theoretical Standpoint, Lecture Notes in Computer Science 9374, Proceedings of the 10th International Conference on Large-Scale Scientific Computations (LSSC15), Sozopol, Bulgaria, 234-242, 2015. Show abstract. Download paper.

  4. A. Mucherino, S. Fidanova, M. Ganzha, Ant Colony Optimization with Environment Changes: an Application to GPS Surveying, IEEE Conference Proceedings, Federated Conference on Computer Science and Information Systems (FedCSIS15), Workshop on Computational Optimization (WCO15), Lodz, Poland, 495-500, 2015. Show abstract. Download paper.

  5. A. Mucherino, A Pseudo de Bruijn Graph Representation for Discretization Orders for Distance Geometry, Lecture Notes in Computer Science 9043, Lecture Notes in Bioinformatics series, F. Ortuño, I. Rojas (Eds.), Proceedings of the 3rd International Work-Conference on Bioinformatics and Biomedical Engineering (IWBBIO15), Part I, Granada, Spain, 514523, 2015. Show abstract. Download paper.

  6. D.S. Gonçalves, A. Mucherino, C. Lavor, An Adaptive Branching Scheme for the Branch & Prune Algorithm applied to Distance Geometry, IEEE Conference Proceedings, Federated Conference on Computer Science and Information Systems (FedCSIS14), Workshop on Computational Optimization (WCO14), Warsaw, Poland, 463-469, 2014. Show abstract. Download paper.

  7. D.S. Gonçalves, A. Mucherino, C. Lavor, Energy-based Pruning Devices for the BP Algorithm for Distance Geometry, IEEE Conference Proceedings, Federated Conference on Computer Science and Information Systems (FedCSIS13), Workshop on Computational Optimization (WCO13), Krakov, Poland, 335-340, 2013. Show abstract. Download paper.

  8. A. Mucherino, On the Identification of Discretization Orders for Distance Geometry with Intervals, Lecture Notes in Computer Science 8085, F. Nielsen and F. Barbaresco (Eds.), Proceedings of Geometric Science of Information (GSI13), Paris, France, 231-238, 2013. Show abstract. Remarks. Download paper. The video of the presentation is available on YouTube: part1, part2, part3.

  9. V. Costa, A. Mucherino, C. Lavor, L.M. Carvalho, N. Maculan, On Suitable Orders for Discretizing Molecular Distance Geometry Problems related to Protein Side Chains, IEEE Conference Proceedings, Federated Conference on Computer Science and Information Systems (FedCSIS12), Workshop on Computational Optimization (WCO12), Wroclaw, Poland, 397-402, 2012. Show abstract. Download paper.

  10. A. Mucherino, C. Lavor, L. Liberti, N. Maculan, On the Discretization of Distance Geometry Problems, ITHEA Conference Proceedings, Mathematics of Distances and Applications 2012 (MDA12), Varna, Bulgaria, 160-168, 2012. Show abstract. Download paper.

  11. W. Gramacho, A. Mucherino, C. Lavor, N. Maculan, A Parallel BP Algorithm for the Discretizable Distance Geometry Problem, IEEE Conference Proceedings, Workshop on Parallel Computing and Optimization (PCO12), 26th IEEE International Parallel & Distributed Processing Symposium (IPDPS12), Shanghai, China, 1756-1762, 2012. Show abstract. Download paper.

  12. A. Mucherino, M. Fuchs, X. Vasseur, S. Gratton, Variable Neighborhood Search for Robust Optimization and Applications to Aerodynamics, Lecture Notes in Computer Science 7116, I. Lirkov, S. Margenov, J. Wansiewski (Eds.), Proceedings of the 8th International Conference on Large-Scale Scientific Computations (LSSC11), Sozopol, Bulgaria, 230-237, 2012. Very preliminary version published as Cerfacs Technical Report TR/PA/11/25 in April 2011. Show abstract. Download paper.

  13. A. Mucherino, C. Lavor, L. Liberti, A Symmetry-Driven BP Algorithm for the Discretizable Molecular Distance Geometry Problem, IEEE Conference Proceedings, Computational Structural Bioinformatics Workshop (CSBW11), International Conference on Bioinformatics & Biomedicine (BIBM11), Atlanta, GA, USA, 390-395, 2011. Show abstract. Download paper.

  14. A. Mucherino, Extending the Definition of β-Consistent Biclustering for Feature Selection, IEEE Conference Proceedings, Federated Conference on Computer Science and Information Systems (FedCSIS11), Workshop on Computational Optimization (WCO11), Szczecin, Poland, 269-274, 2011. Show abstract. Download paper.

  15. A. Mucherino, A. Urtubia, Feature Selection for Datasets of Wine Fermentations, Proceedings of the 10th International Conference on Modeling and Applied Simulation (MAS11), Rome, Italy, 309-313, 2011. Show abstract. Download paper.

  16. A. Mucherino, G. Ruß, Recent Developments in Data Mining and Agriculture, IbaI Conference Proceedings, Industrial Conference on Data Mining (ICDM11), Workshop on Data Mining in Agriculture (DMA11), New York City, USA, 90-98, 2011. Show abstract. Download paper.

  17. L. Liberti, B. Masson, J. Lee, C. Lavor, A. Mucherino, On the Number of Solutions of the Discretizable Molecular Distance Geometry Problem, Lecture Notes in Computer Science 6831, W. Wang, X. Zhu, D-Z. Du (Eds.), Proceedings of the 5th Annual International Conference on Combinatorial Optimization and Applications (COCOA11), Zhangjiajie, China, 322-342, 2011. Show abstract. Download paper. Preliminary version available on arXiv.

  18. A. Mucherino, C. Lavor, T. Malliavin, L. Liberti, M. Nilges, N. Maculan, Influence of Pruning Devices on the Solution of Molecular Distance Geometry Problems, Lecture Notes in Computer Science 6630, P.M. Pardalos, S. Rebennack (Eds.), Proceedings of the 10th International Symposium on Experimental Algorithms (SEA11), Crete, Greece, 206-217, 2011. Show abstract. Download paper.

  19. C. Lavor, L. Liberti, A. Mucherino, On the Solution of Molecular Distance Geometry Problems with Interval Data, IEEE Conference Proceedings, International Workshop on Computational Proteomics (IWCP10), International Conference on Bioinformatics & Biomedicine (BIBM10), Hong Kong, 77-82, 2010. Show abstract. Download paper.

  20. A. Mucherino, L. Liberti, C. Lavor, MD-jeep: an Implementation of a Branch & Prune Algorithm for Distance Geometry Problems, Lectures Notes in Computer Science 6327, K. Fukuda et al. (Eds.), Proceedings of the 3rd International Congress on Mathematical Software (ICMS10), Kobe, Japan, 186-197, 2010. Show abstract. Download paper.

  21. A. Mucherino, A. Urtubia, Consistent Biclustering and Applications to Agriculture, IbaI Conference Proceedings, Proceedings of the Industrial Conference on Data Mining (ICDM10), Workshop on Data Mining in Agriculture (DMA10), Berlin, Germany, 105-113, 2010. Show abstract. Download paper.

  22. A. Mucherino, C. Lavor, L. Liberti, E-G. Talbi, A Parallel Version of the Branch & Prune Algorithm for the Molecular Distance Geometry Problem, IEEE Conference Proceedings, ACS/IEEE International Conference on Computer Systems and Applications (AICCSA10), Hammamet, Tunisia, 1-6, 2010. Show abstract. Download paper.

  23. C. Lavor, A. Mucherino, L. Liberti, N. Maculan, An Artificial Backbone of Hydrogens for Finding the Conformation of Protein Molecules, IEEE Conference Proceedings, Computational Structural Bioinformatics Workshop (CSBW09), Washington D.C., USA, 152-155, 2009. Show abstract. Download paper.

  24. A. Mucherino, C. Lavor, The Branch and Prune Algorithm for the Molecular Distance Geometry Problem with Inexact Distances, Proceedings of World Academy of Science, Engineering and Technology 58, International Conference on Bioinformatics and Biomedicine (ICBB09), Venice, Italy, 349-353, 2009. Show abstract. Download paper.

  25. C. Lavor, A. Mucherino, L. Liberti, N. Maculan, Computing Artificial Backbones of Hydrogen Atoms in order to Discover Protein Backbones, IEEE Conference Proceedings, International Multiconference on Computer Science and Information Technology (IMCSIT09), Workshop on Computational Optimization (WCO09), Mragowo, Poland, 751-756, 2009. Show abstract. Download paper.

  26. A. Mucherino, L. Liberti, C. Lavor, N. Maculan, Comparisons between an Exact and a Meta-Heuristic Algorithm for the Molecular Distance Geometry Problem, ACM Conference Proceedings, Genetic and Evolutionary Computation Conference (GECCO09), Montréal, Canada, 333-340, 2009. Show abstract. Download paper.

  27. F. Marinelli, O. de Weck, D. Krob, L. Liberti, A. Mucherino, A General Framework for Combined Module- and Scale-based Product Platform Design, 2nd International Symposium on Engineering Systems Proceedings, MIT, Cambridge, Massachusetts, June 2009. Show abstract. Download paper.

  28. A.R. Kammerdiner, A. Mucherino, P.M. Pardalos, Application of Monkey Search Meta-Heuristic to Solving Instances of the Multidimensional Assignment Problem, Lecture Notes in Control and Information Sciences 381, M.J. Hirsch, C. Commander, P.M. Pardalos, R. Murphey (Eds.), Proceedings of the 8th International Conference on Optimization and Cooperative Control Strategies (CCO08), Gainesville, Florida, 385-397, 2009. Show abstract. Download paper.

  29. A. Mucherino, O. Seref, Monkey Search: A Novel Meta-Heuristic Search for Global Optimization, AIP Conference Proceedings 953, O. Seref, O.E. Kundakcioglu, P.M. Pardalos (Eds.), Proceedings of the Conference "Data Mining, System Analysis and Optimization in Biomedicine", Gainesville, Florida, 162-173, 2007. Show abstract. Download paper.


Book chapters (refereed)
  1. A. Mucherino, S. Fidanova, M. Ganzha, Introducing the Environment in Ant Colony Optimization. In: "Recent Advances in Computational Optimization", S. Fidanova (Ed.), Studies in Computational Intelligence 655, 147--158, 2016. Show abstract. Download paper.

  2. D.S. Gonçalves, J. Nicolas, A. Mucherino, C. Lavor, Finding Optimal Discretization Orders for Molecular Distance Geometry by Answer Set Programming. In: "Recent Advances in Computational Optimization", S. Fidanova (Ed.), Studies in Computational Intelligence 610, 1-15, 2015. Show abstract. Download paper.

  3. J. Seo, J-K. Kim, J. Ryu, C. Lavor, A. Mucherino, D-S. Kim, BetaMDGP: Protein Structure Determination Algorithm Based on the Beta-complex. In: "Transactions on Computational Science XXII", M.L. Gavrilova, C.J.K. Tan (Eds.), Lecture Notes in Computer Science 8360, 130-155, 2014. Show abstract. Remarks. Download paper.

  4. T.E. Malliavin, A. Mucherino, M. Nilges, Distance Geometry in Structural Biology: New Perspectives. In: "Distance Geometry: Theory, Methods and Applications", A. Mucherino, C. Lavor, L. Liberti, N. Maculan (Eds.), 329-350, 2013. Show abstract. Download paper.

  5. L. Liberti, C. Lavor, A. Mucherino, The Discretizable Molecular Distance Geometry Problem seems Easier on Proteins. In: "Distance Geometry: Theory, Methods and Applications", A. Mucherino, C. Lavor, L. Liberti, N. Maculan (Eds.), 47-60, 2013. Show abstract. Download paper.

  6. A. Mucherino, L. Liberti, A VNS-based Heuristic for Feature Selection in Data Mining. In: "Hybrid Meta-Heuristics", Studies in Computational Intelligence 434, E-G. Talbi (Ed.), 353-368, 2013. Show abstract. Download paper.

  7. A. Mucherino, O. Seref, Modeling and Solving Real Life Global Optimization Problems with Meta-Heuristic Methods. In: "Advances in Modeling Agricultural Systems", Springer Optimization and Its Applications 25, P.J. Papajorgji, P.M. Pardalos (Eds.), 403-420, 2008. Show abstract. Download paper.

  8. G. Ceci, A. Mucherino, M. D'Apuzzo, D. di Serafino, S. Costantini, A. Facchiano, G. Colonna, Computational Methods for Protein Fold Prediction: an Ab-Initio Topological Approach. In: "Data Mining in Biomedicine", Springer Optimization and Its Applications 7, P.M. Pardalos, V. Boginski and A. Vazacopoulos (Eds.), 391-429, 2007. Show abstract. Download paper.


Short conference papers (up to 4 pages, refereed)
  1. R. Alves, A. Cassioli, A. Mucherino, C. Lavor, L. Liberti, Adaptive Branching in iBP with Clifford Algebra, Proceedings of Distance Geometry and Applications (DGA13), Manaus, Amazonas, Brazil, 65-69, 2013. Show abstract. Download paper.

  2. V. Costa, A. Mucherino, L.M. Carvalho, N. Maculan, On the Discretization of iDMDGP instances regarding Protein Side Chains with Rings, Proceedings of Distance Geometry and Applications (DGA13), Manaus, Amazonas, Brazil, 99-102, 2013. Show abstract. Download paper.

  3. W. Gramacho, D.S. Gonçalves, A. Mucherino, N. Maculan, A new Algorithm to Finding Discretizable Orderings for Distance Geometry, Proceedings of Distance Geometry and Applications (DGA13), Manaus, Amazonas, Brazil, 149-152, 2013. Show abstract. Download paper.

  4. C. Lavor, A. Mucherino, L. Liberti, N. Maculan, Finding Low-Energy Homopolymer Conformations by a Discrete Approach, Proceedings of Global Optimization Workshop 2012 (GOW12), Natal, Brazil, 3-6, 2012. Show abstract. Download paper.

  5. A. Mucherino, I. Wohlers, G.W. Klau, R. Andonov, Sparsifying Distance Matrices for Protein-Protein Structure Alignments, Proceedings of the 10th Cologne-Twente Workshop on Graphs and Combinatorial Optimization (CTW11), Rome, Italy, 211-214, 2011. Show abstract. Download paper.

  6. L. Liberti, B. Masson, C. Lavor, A. Mucherino, Branch-and-Prune Trees with Bounded Width, Proceedings of the 10th Cologne-Twente Workshop on Graphs and Combinatorial Optimization (CTW11), Rome, Italy, 189-193, 2011. Download paper.

  7. A. Mucherino, C. Lavor, L. Liberti, N. Maculan, Strategies for Solving Distance Geometry Problems with Inexact Distances by Discrete Approaches, Proceedings of Toulouse Global Optimization 2010 (TOGO10), Toulouse, France, 93-96, 2010. Show abstract. Download paper.

  8. A. Mucherino, C. Lavor, N. Maculan, The Molecular Distance Geometry Problem Applied to Protein Conformations, Proceedings of the 8th Cologne-Twente Workshop on Graphs and Combinatorial Optimization (CTW09), Paris, France, 337-240, 2009. Download paper.

  9. C. Lavor, L. Liberti, A. Mucherino, N. Maculan, On a Discretizable Subclass of Instances of the Molecular Distance Geometry Problem, ACM Conference Proceedings, 24th Annual ACM Symposium on Applied Computing, Hawaii, USA, 804-805, 2009. Show abstract. Download paper.


Extended abstracts (refereed)
  1. J. Omer, A. Mucherino, Integer Programming for the Search of a Discretization Order in Distance Geometry Problems, Proceedings of the conference ROADEF17, Metz, France, February 2017. Download extended abstract.

  2. A. Mucherino, Discretization Orders and Distance Geometry, Proceedings of the conference ROADEF15, Marseille, France, February 2015. Download extended abstract.

  3. D.S. Gonçalves, A. Mucherino, Challenges for Extending Discretizable Molecular Distance Geometry to Interval Data, Proceedings of Many Faces of Distances (MFD14), Campinas, São Paulo, Brazil, October 2014. Download extended abstract.

  4. D.S. Gonçalves, J. Nicolas, A. Mucherino, Searching for Optimal Orders for Discretized Distance Geometry, Proceedings of Many Faces of Distances (MFD14), Campinas, São Paulo, Brazil, October 2014. Download extended abstract.

  5. R. Alves, A. Cassioli, A. Mucherino, C. Lavor, L. Liberti, The Integration of Clifford Algebra in the iBP algorithm for the DMDGP, Proceedings of the International Work-Conference on Bioinformatics and Biomedical Engineering (IWBBIO13), Granada, Spain, 745-746, 2013. Download extended abstract.

  6. M. Le Boudic-Jamin, A. Mucherino, R. Andonov, Modeling Protein Flexibility by Distance Geometry, Proceedings of the conference ROADEF 2012, Angers, France, April 2012. Download extended abstract.

  7. L. Liberti, C. Lavor, A. Mucherino, An Exponential Algorithm for the Discretizable Molecular Distance Geometry Problem is Polynomial on Proteins, Proceedings of the 7th International Symposium on Bioinformatics Research and Applications (ISBRA11), Book of extended abstracts, pages 40-43, Changsha, China, May 2011. Download extended abstract.

  8. A. Mucherino, C. Lavor, L. Liberti, The Discretizable Molecular Distance Geometry Problem: from Ideal to Real Instances, Proceedings of the conference ROADEF 2011, Saint Etienne, France, March 2011. Download extended abstract.

  9. A. Mucherino, L. Jourdan, E-G. Talbi, A Heuristic for Biclustering based on a Bilevel Reformulation, Proceedings of the International Conference on Metaheuristics and Nature Inspired Computing (META10), Djerba, Tunisia, October 2010. Download extended abstract.

  10. A. Mucherino, S. Cafieri, A New Heuristic Algorithm for Consistent Biclustering, Proceedings of the EU/MEeting 2010, Lorient, France, June 2010. Download extended abstract.

  11. A. Mucherino, C. Lavor, L. Liberti, E-G. Talbi, On Suitable Parallel Implementations of the Branch & Prune Algorithm for Distance Geometry, Proceedings of the Grid5000 Spring School, Lille, France, April 2010. Download extended abstract.

  12. A. Mucherino, C. Lavor, L. Liberti, N. Maculan, A Discrete Approach for Finding the Conformation of Molecules from NMR Data, Proceedings of the conference ROADEF 2010, Toulouse, France, February 2010. Download extended abstract.

  13. C. Lavor, L. Liberti, A. Mucherino, N. Maculan, Recent Results on the Discretizable Molecular Distance Geometry Problem, Proceedings of the conference ROADEF 2009, Nancy, France, 283-284, 2009. Download extended abstract.


Other
  1. M.C. De Cola, A. Mucherino, G. Felici, L. Liberti, Branch-and-Prune Algorithm for the Sensor Network Localization Problem, IASI Technical Report R.4, 2013. Show abstract.

  2. L. Liberti, C. Lavor, B. Masson, A. Mucherino, Polynomial Cases of the Discretizable Molecular Distance Geometry Problem, arXiv e-print, arXiv:1103.1264v1, March 2010. Show abstract.

  3. A. Mucherino, S. Cafieri, A New Heuristic for Feature Selection by Consistent Biclustering, arXiv e-print, arXiv:1003.3279v1, March 2010. Show abstract.

  4. A. Mucherino, O. Seref, P.M. Pardalos, Simulating Protein Conformations through Global Optimization, arXiv e-print, arXiv:0811.3094v1, November 2008. Show abstract.


Theses
  1. A. Mucherino, Geometric Aspects in the Simulation of Protein Folding Processes (in Italian), PhD Thesis, Second University of Naples. December 18, 2005.

  2. A. Mucherino, Quadratic Optimization: Algorithms and Software for Dense Problems (in Italian), Master Thesis, Second University of Naples. October 30, 2001.



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